"""
Created on Sat Mar 30 07:59:28 2024

@author: marik
"""

'\nCreated on Sat Mar 30 07:59:28 2024\n\n@author: marik\n'

import sys
sys.path.append('..')
import pandas as pd
import tomotree as tomo
import matplotlib.pyplot as plt
import numpy as np

Read the data

csv_tof = 'tomoWood_data/3_TOFDefEcc.txt'
csv_nodes = 'tomoWood_data/3_posRecDefEcc.txt'
image_name = "tomoWood_data/3_PhotoDefEcc.png"
scale = 2.39
shift = np.array([430,300])
df = pd.read_csv(csv_nodes, sep='\t',header=None)
df = df.values*1000
nodes = df.copy()
nodes = nodes - nodes.mean(axis=0)

n2 = nodes.copy() # for aligning to image
n2[:,1] = -n2[:,1]
n2 = n2*scale + shift
im = plt.imread(image_name)
plt.imshow(im,zorder=1)
plt.scatter(*n2.T, s=np.arange(1,17)*5)
plt.title("Node positions. The size of the node corresponds to the node number.")
plt.gca().set_aspect(1);

df = pd.read_csv(csv_tof, sep='\t',header=None)
df.columns.name = "source node number"
df.columns = range(1,len(df.columns)+1)
plt.imshow(df.values.astype(float), cmap='Greys',
       origin='lower')
plt.gca().set_aspect(0.5)

df.plot(subplots=[np.arange(1,9),np.arange(9,17)])
# plt.plot(*nodes.T,'o')

array([<Axes: >, <Axes: >], dtype=object)

d = tomo.roll_table(df.values)*1000
t=tomo.Tomo(nodes=nodes, times=d.values, nx=31, ny=31)
print(t.check_triangle_inequality())
t.plot(speed_min=1100, speed_max=1500, rays=False)
plt.suptitle("Cell velocity from ray speed average")

Triangle inequality failed 234 out of 3360 which is 7%.

Text(0.5, 0.98, 'Cell velocity from ray speed average')

t.plot(grid=False)

<Axes: >

Následující obrázek je divným. Rozložení rychlostí by mělo být kvadratické.

t.plot_angular_dependence();

EBSI method

t1=tomo.Tomo(nodes=nodes, times=d.values,nx=61,ny=61)
t1.do_EBSI_method()

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limits = t1.limit_cell_plot_velocities(4)
t1.plot(rays=False, **limits)
plt.suptitle("EBSI method", )

Text(0.5, 0.98, 'EBSI method')

SIRT method

t2=tomo.Tomo(nodes=nodes, times=d.values, nx=21, ny=21)
# report = t2.do_SIRT_method(speed_min=500, speed_max=2000)
report = t2.do_SIRT_method(speed_min=1000, speed_max=1400)
print(report)

SIRT finished in 258 ms.
Speed interval: min=1000.0 for 580 segments, max=1400.0  for 3198 segments

t2.plot(speed_min=1000, speed_max=1400)

<Axes: >

ERSM method

t3=tomo.Tomo(nodes=nodes, times=d.values, nx=51, ny=51, symmetric=True)
t3.do_ERSM_method()

limits = t3.limit_cell_plot_velocities(4)
t3.plot(grid=True, rays=False, **limits)
plt.suptitle("ERSM methos, tangential velocities fixed")

Text(0.5, 0.98, 'ERSM methos, tangential velocities fixed')

ERSM method

Do not fix nonradial velocity

t4=tomo.Tomo(nodes=nodes, times=d.values, nx=51, ny=51, symmetric=True)
t4.do_ERSM_method(fix_velocity_EBSI_function=lambda x, y: x )

limits = t4.limit_cell_plot_velocities(4)
t4.plot(rays=False, **limits)

<Axes: >